About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16945714_16946456_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16945714 - 16946456
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGTTCCTAAAG
Flanking Amino Acid:
AEAGLKRGDQIMEVNGQNFE
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
80
0.75
1
78.6
31
Major PPT
75.1
0.57
1
75.6
33.4
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
55.5
0.03
1.9
65.02
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046385
16913322 - 17031820
118499
ENSAPLT00000032102
16913322 - 17031820
118499
ENSAPLT00000016587
16913322 - 17031820
118499