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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16951094_16951923_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16951094 - 16951923
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
CTTTGCCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTTGCCTAACA
Flanking Amino Acid:
EPADKTDDDIEQLLEFMHQL
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
72.7
33.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
75.2
0.57
0.9
69.8
35.4
Minor 5ss
26.3
-2.7
2.9
27.3
37.8
Minor BPS
58.9
0.28
2.1
75.88
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016587
16913322 - 17031820
118499
ENSAPLT00000046385
16913322 - 17031820
118499
ENSAPLT00000032102
16913322 - 17031820
118499