Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16952108_16958853_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16952108 - 16958853

Intron Length:

6746

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATTG

5'SS Class:

strong_major

3'SS Sequence:

GTCTTCTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTGAT

U12 Branch Point Sequence:

AGACATTGAACT

Flanking Amino Acid:

GSSSLSDIYQATESEMGDVD

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

74.9

36.1

Major BPS

73.6

0.59

1.2

65.3

43.7

Major PPT

82.5

0.73

0.7

31.1

Minor 5ss

40.9

-1

3.2

55.7

48.5

Minor BPS

48.8

-0

1.6

64.16

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015846

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016587

16913322 - 17031820

118499

ENSAPLT00000046385

16913322 - 17031820

118499

ENSAPLT00000032102

16913322 - 17031820

118499