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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16994983_17006375_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16994983 - 17006375
Intron Length:
11393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATAAA
5'SS Class:
strong_major
3'SS Sequence:
CATCCCTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCTCATTC
Flanking Amino Acid:
MKDSMFLPPCSFGKQSGGKR
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
78.3
30.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.3
0.5
0.8
66.2
29.6
Minor 5ss
40.5
-1.1
2.7
50.4
46.1
Minor BPS
50.5
-0
1.8
66.9
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016587
16913322 - 17031820
118499
ENSAPLT00000046385
16913322 - 17031820
118499
ENSAPLT00000032102
16913322 - 17031820
118499