About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17007861_17008440_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17007861 - 17008440
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTGAAATTAAAT
Flanking Amino Acid:
ILSHFREHQLRIMSSSARYE
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
85.5
0.8
0.7
84.4
23.4
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
49.9
0.08
1.9
72.83
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016587
16913322 - 17031820
118499
ENSAPLT00000046385
16913322 - 17031820
118499
ENSAPLT00000032102
16913322 - 17031820
118499