About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17047292_17048248_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17047292 - 17048248
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTACGATCA
5'SS Class:
major
3'SS Sequence:
TGCTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATAAAT
U12 Branch Point Sequence:
ATAAATGTGACT
Flanking Amino Acid:
VHVKELGVVLGIESSDLPLL
Intron Amino Acid Position:
1120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
62.5
39
Major BPS
56.8
0.17
1.2
65.3
38.6
Major PPT
83.9
0.76
0.8
81
31
Minor 5ss
36.7
-1.5
3.2
39.7
45.7
Minor BPS
44.3
-0.3
2.1
63.66
40.5

Associated Gene:

Gene:
FNIP1
Ensembl Gene ID:
ENSAPLG00000002569
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029928
17047213 - 17109195
61983
ENSAPLT00000029055
17047213 - 17109195
61983
ENSAPLT00000002650
17047213 - 17087726
40514