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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17055416_17060683_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17055416 - 17060683
Intron Length:
5268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTGGTTTAATT
Flanking Amino Acid:
NRIVDALNEFRTTICNLYTM
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85.9
0.81
0.6
80.5
31.5
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
64.2
0.53
1.8
82.98
39.3

Associated Gene:

Gene:
FNIP1
Ensembl Gene ID:
ENSAPLG00000002569
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029928
17047213 - 17109195
61983
ENSAPLT00000029055
17047213 - 17109195
61983
ENSAPLT00000002650
17047213 - 17087726
40514