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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17063271_17066464_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17063271 - 17066464
Intron Length:
3194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
CCTTGTTTTACA
Flanking Amino Acid:
TIMNGLLGNIVHSNPMDMPG
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
85
0.79
0.8
78.9
33.1
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
49.2
-0
2.1
62.29
44.3

Associated Gene:

Gene:
FNIP1
Ensembl Gene ID:
ENSAPLG00000002569
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029055
17047213 - 17109195
61983