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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17064366_17066464_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17064366 - 17066464
Intron Length:
2099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGTATTTTACGT
Flanking Amino Acid:
TIMNGLLGNIGLSQLCSPRR
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
75.9
0.58
0.9
71.1
34.9
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
48.4
-0
1.9
68.35
42.9

Associated Gene:

Gene:
FNIP1
Ensembl Gene ID:
ENSAPLG00000002569
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029928
17047213 - 17109195
61983
ENSAPLT00000002650
17047213 - 17087726
40514