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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17066557_17067035_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17066557 - 17067035
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
CTGGATTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
GTTTTCTGGATT
Flanking Amino Acid:
TGSSIYGSLNTLQDSLEFIN
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.8
43.8
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
72.4
0.5
0.9
69.5
41.4
Minor 5ss
33.8
-1.8
3
40.5
38.8
Minor BPS
64.4
0.53
1.4
80.04
35.8

Associated Gene:

Gene:
FNIP1
Ensembl Gene ID:
ENSAPLG00000002569
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002650
17047213 - 17087726
40514
ENSAPLT00000029928
17047213 - 17109195
61983
ENSAPLT00000029055
17047213 - 17109195
61983