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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17067111_17067362_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17067111 - 17067362
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGACCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCCGTTTTGACC
Flanking Amino Acid:
KGSTLKIHQIRSPPQLMLSK
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
73.5
38.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
76.4
0.59
0.9
67.7
39.2
Minor 5ss
41
-1
2.8
53.5
43.7
Minor BPS
54.9
0.14
1.4
59.88
40.6

Associated Gene:

Gene:
FNIP1
Ensembl Gene ID:
ENSAPLG00000002569
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029055
17047213 - 17109195
61983
ENSAPLT00000002650
17047213 - 17087726
40514
ENSAPLT00000029928
17047213 - 17109195
61983