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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17067464_17071656_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17067464 - 17071656
Intron Length:
4193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGCTTCTAAAAT
Flanking Amino Acid:
DAKEQCPKYQGSRCSSDANM
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
87.1
0.84
0.8
84.8
35.4
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
56.8
0.29
1.8
73.29
43.5

Associated Gene:

Gene:
FNIP1
Ensembl Gene ID:
ENSAPLG00000002569
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002650
17047213 - 17087726
40514
ENSAPLT00000029928
17047213 - 17109195
61983
ENSAPLT00000029055
17047213 - 17109195
61983