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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17071801_17080648_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17071801 - 17080648
Intron Length:
8848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
TGGCACGTATGT
Flanking Amino Acid:
KRKIEDVSVSKLCSDAQVRV
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
29
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
86.6
0.82
0.8
84.6
36
Minor 5ss
36.7
-1.5
3
52.2
44.4
Minor BPS
37.7
-0.8
2.4
54.94
46.4

Associated Gene:

Gene:
FNIP1
Ensembl Gene ID:
ENSAPLG00000002569
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029928
17047213 - 17109195
61983
ENSAPLT00000029055
17047213 - 17109195
61983
ENSAPLT00000002650
17047213 - 17087726
40514