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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17080776_17087715_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17080776 - 17087715
Intron Length:
6940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCA
5'SS Class:
major
3'SS Sequence:
TTTTTAATTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATT
Flanking Amino Acid:
MLPSWPLPEFDPS
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.9
38.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76
0.59
1.1
76.5
35.6
Minor 5ss
28.4
-2.5
3.6
38.8
46.4
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
FNIP1
Ensembl Gene ID:
ENSAPLG00000002569
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002650
17047213 - 17087726
40514