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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17116593_17116949_R

Intron Information:

Intron Rank:
143726
Intron Class:
major
Intron Phase:
Intron Coordinates:
17116593 - 17116949
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.1
0.7
0.9
81.2
36.5
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
72
0.77
1.4
84.52
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024630
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017405
17113233 - 17124672
11440