Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17117133_17117481_R

Intron Information:

Intron Rank:

143727

Intron Class:

major

Intron Phase:

Intron Coordinates:

17117133 - 17117481

Intron Length:

349

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAAAGAT

5'SS Class:

major

3'SS Sequence:

TTTCATCCTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

TTTGCTTTAGAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

0.9

73.6

30.2

Major BPS

0.72

78.4

31.2

Major PPT

80.4

0.69

0.7

78.4

Minor 5ss

-2.8

3.4

37.5

47.2

Minor BPS

58.1

0.25

1.8

72.33

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024630

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017405

17113233 - 17124672

11440