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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17118315_17119544_R

Intron Information:

Intron Rank:
143729
Intron Class:
major
Intron Phase:
Intron Coordinates:
17118315 - 17119544
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
TCTCTTCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TCGTTCAGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
64.9
0.37
1
61
37.5
Major PPT
76.5
0.6
0.7
69.8
31.1
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
52
0.06
1.8
64.65
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024630
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017405
17113233 - 17124672
11440