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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17119582_17119818_R

Intron Information:

Intron Rank:
143730
Intron Class:
major
Intron Phase:
Intron Coordinates:
17119582 - 17119818
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.4
0.73
0.8
81.2
36.5
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
62.1
0.24
1.6
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024630
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017405
17113233 - 17124672
11440