About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17119939_17120301_R

Intron Information:

Intron Rank:
143731
Intron Class:
major
Intron Phase:
Intron Coordinates:
17119939 - 17120301
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTGCATTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
76.4
0.59
1
68.5
42.1
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
47.8
-0
1.8
67.66
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024630
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017405
17113233 - 17124672
11440