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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17120449_17121295_R

Intron Information:

Intron Rank:
143732
Intron Class:
major
Intron Phase:
Intron Coordinates:
17120449 - 17121295
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAAGAT
U12 Branch Point Sequence:
AGATCTGGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
48.4
-0.1
1.1
43
37.8
Major PPT
81.3
0.7
0.7
72.7
32.1
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
45.7
-0.3
2
55.17
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024630
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017405
17113233 - 17124672
11440