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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17122391_17122611_R

Intron Information:

Intron Rank:
143734
Intron Class:
major
Intron Phase:
Intron Coordinates:
17122391 - 17122611
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTTAG
5'SS Class:
major
3'SS Sequence:
TTCTCAAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GCTTTCTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
67.6
40.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.2
0.52
1
67.5
37
Minor 5ss
41
-1
2.6
49.2
47.1
Minor BPS
59.2
0.37
1.7
74.04
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024630
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017405
17113233 - 17124672
11440