About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17133542_17133792_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17133542 - 17133792
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGCGTACT
5'SS Class:
major
3'SS Sequence:
TTTCTCCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TTTCTCCTAACA
Flanking Amino Acid:
HTGDIGKWLPNGTLKIIDRK
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.1
65
40.6
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
81.7
0.71
0.8
77.8
29.5
Minor 5ss
34.8
-1.7
3.1
53
43.7
Minor BPS
68.4
0.57
1.6
81.54
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002999
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003125
17129904 - 17153502
23599