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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17133910_17134452_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17133910 - 17134452
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAACT
5'SS Class:
major
3'SS Sequence:
GACTGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATTAGCAACT
Flanking Amino Acid:
NYFASKGEGEICVKGPNVFK
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
78.1
36.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
75.8
0.58
1
68.8
41.6
Minor 5ss
41.7
-0.9
2.9
59.3
44.8
Minor BPS
46.6
-0.1
2.3
74.07
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002999
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003125
17129904 - 17153502
23599