About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17138057_17140202_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17138057 - 17140202
Intron Length:
2146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCGTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
CTTCCCGTCACA
Flanking Amino Acid:
LAHMFERMVQSVVYCHGGRI
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.6
33.4
Major BPS
65
0.37
1.3
75
40
Major PPT
74.3
0.55
0.8
67.8
32.3
Minor 5ss
38
-1.4
3.2
50.9
45.8
Minor BPS
48.8
-0.1
2.4
68.36
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002999
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003125
17129904 - 17153502
23599