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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17140281_17143190_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17140281 - 17143190
Intron Length:
2910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATACC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TTGTGCTTTCTT
Flanking Amino Acid:
DFSGFLKVTESQWSPTCEDV
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.3
30.8
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
84.9
0.78
0.8
76.9
37.4
Minor 5ss
30.9
-2.2
2.7
37.4
40
Minor BPS
39.2
-0.7
3.7
71.2
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002999
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003125
17129904 - 17153502
23599