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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17143265_17147307_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17143265 - 17147307
Intron Length:
4043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGGCTTTTAAAA
Flanking Amino Acid:
SIVCFTSGTTGNPKGAMLTH
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
56.7
0.21
1.4
62.33
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002999
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003125
17129904 - 17153502
23599