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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17149887_17150029_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17149887 - 17150029
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCCTTCTCACCT
Flanking Amino Acid:
IGVFAQNRPEWIISELACYT
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
85
0.87
0.8
85.6
23
Major PPT
70.4
0.46
1
65.8
35.9
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
48.3
-0
1.9
62.74
47.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002999
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003125
17129904 - 17153502
23599