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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17150132_17150356_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17150132 - 17150356
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTCTCTCTGACT
Flanking Amino Acid:
QPYQWLSYREVAERAEALGS
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
75.8
0.58
0.9
65.7
40
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
65.8
0.58
1.7
83.75
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002999
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003125
17129904 - 17153502
23599