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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17150422_17151452_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17150422 - 17151452
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAAGC
5'SS Class:
major
3'SS Sequence:
TTGTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
TGCCCCCTAACT
Flanking Amino Acid:
EVFRRGFSISENGPCLGFRK
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
66.3
39.5
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
83
0.74
0.9
77.3
37
Minor 5ss
28.9
-2.4
2.8
35.8
40.7
Minor BPS
64
0.52
1.7
79.45
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002999
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003125
17129904 - 17153502
23599