Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17202434_17202704_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

17202434 - 17202704

Intron Length:

271

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGCTTG

5'SS Class:

weak_major

3'SS Sequence:

GAAACTTAAGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

AGAAACTTAAGG

Flanking Amino Acid:

AAGKRCYGSMEPEEEDFYST

Intron Amino Acid Position:

108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

64.1

42.6

Major BPS

77.8

0.69

78.2

31.8

Major PPT

43.1

-0.4

1.7

40.8

42.5

Minor 5ss

0.44

2.3

69.5

42.7

Minor BPS

47.1

-0.3

1.9

49.74

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024780

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047861

17201771 - 17202776

1006