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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17208506_17209538_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17208506 - 17209538
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAA
U12 Branch Point Sequence:
CTTGTATCAACC
Flanking Amino Acid:
KLENICSVLKEKTAHENNCK
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
61.3
0.28
1.3
66
40.9
Major PPT
83.8
0.76
0.6
83.9
24.2
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
48.6
-0.1
1.9
63.09
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023893
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040056
17207283 - 17209733
2451