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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17224703_17226024_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17224703 - 17226024
Intron Length:
1322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
CATTTCACATCT
Flanking Amino Acid:
ACPVLVGCKWVSNKWFHERG
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
81.3
0.7
0.8
75.9
32.8
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
45.7
-0.2
2
66.03
44.3

Associated Gene:

Gene:
P4HA2
Ensembl Gene ID:
ENSAPLG00000003370
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046612
17224632 - 17252066
27435
ENSAPLT00000003507
17224632 - 17252066
27435