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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17226547_17228612_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17226547 - 17228612
Intron Length:
2066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
GTTTGCTCACTT
Flanking Amino Acid:
GNRVATFLNYMSDVEAGGAT
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
88.9
0.88
0.7
88.2
29.1
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
48.3
-0
2.2
72.73
44.5

Associated Gene:

Gene:
P4HA2
Ensembl Gene ID:
ENSAPLG00000003370
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003507
17224632 - 17252066
27435