Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17228807_17231224_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17228807 - 17231224

Intron Length:

2418

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGATTG

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTGTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGGAA

U12 Branch Point Sequence:

TTGTCTGTTACA

Flanking Amino Acid:

QYEPHFDFSRRPFDSTLKSE

Intron Amino Acid Position:

440

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

72.5

39.9

Major BPS

62.2

0.3

1.4

63.4

44.3

Major PPT

81.8

0.72

0.9

Minor 5ss

41.1

-1

3.1

48.2

47.3

Minor BPS

50.4

0.01

2.3

70.62

41.9

Associated Gene:

Gene:

P4HA2

Ensembl Gene ID:

ENSAPLG00000003370

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046612

17224632 - 17252066

27435

ENSAPLT00000029919

17226546 - 17252066

25521

ENSAPLT00000003507

17224632 - 17252066

27435