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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17232089_17232328_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17232089 - 17232328
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTGTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTTTCCTATCC
Flanking Amino Acid:
LTVASYRVSKSSWLEEDDDP
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71.3
0.48
0.8
64.3
36.6
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
54.8
0.13
1.9
70.36
41.2

Associated Gene:

Gene:
P4HA2
Ensembl Gene ID:
ENSAPLG00000003370
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046612
17224632 - 17252066
27435
ENSAPLT00000029919
17226546 - 17252066
25521
ENSAPLT00000003507
17224632 - 17252066
27435