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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17232400_17234623_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17232400 - 17234623
Intron Length:
2224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGACACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
EKIKQLAKPRLARATVRDPK
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.2
39.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
80.3
0.68
0.9
76.6
36.7
Minor 5ss
48
-0.2
2.8
59.7
45.1
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
P4HA2
Ensembl Gene ID:
ENSAPLG00000003370
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046612
17224632 - 17252066
27435
ENSAPLT00000029919
17226546 - 17252066
25521
ENSAPLT00000003507
17224632 - 17252066
27435