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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17240734_17242866_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17240734 - 17242866
Intron Length:
2133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
TCAGGCTGAAGC
Flanking Amino Acid:
AEEAKLSQIKSWAEKMDVLT
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.4
39.5
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
85.8
0.81
0.8
77.5
36.2
Minor 5ss
30.7
-2.2
3.4
40.4
45.8
Minor BPS
43
-0.5
2.1
51.45
45.5

Associated Gene:

Gene:
P4HA2
Ensembl Gene ID:
ENSAPLG00000003370
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046612
17224632 - 17252066
27435
ENSAPLT00000029919
17226546 - 17252066
25521
ENSAPLT00000003507
17224632 - 17252066
27435