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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17290167_17291977_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17290167 - 17291977
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
GTTCTTTTAAGT
Flanking Amino Acid:
ELPELLGGFQINPGSKAALA
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
71.4
0.48
0.9
65.4
36.1
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
62.2
0.46
1.6
77.46
39.1

Associated Gene:

Gene:
PDLIM4
Ensembl Gene ID:
ENSAPLG00000003185
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003255
17290095 - 17318820
28726