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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17300422_17312251_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17300422 - 17312251
Intron Length:
11830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATAAAC
U12 Branch Point Sequence:
TAAACCTCAGGG
Flanking Amino Acid:
YRINIEPEPQDNGPVLNKRP
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
48.7
-0
1.2
57
36.4
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
42.8
-0.6
2
47.01
45.1

Associated Gene:

Gene:
PDLIM4
Ensembl Gene ID:
ENSAPLG00000003185
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003255
17290095 - 17318820
28726