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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17312431_17314009_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17312431 - 17314009
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCAA
5'SS Class:
major
3'SS Sequence:
TGTTTCCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTTCCAAACA
Flanking Amino Acid:
MSGLHIAPAQSIDPIKSLPR
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
65.8
41.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
71.5
0.48
1
67.2
38.3
Minor 5ss
28.7
-2.4
3.4
37.4
47.3
Minor BPS
54.8
0.15
2
72.44
39.4

Associated Gene:

Gene:
PDLIM4
Ensembl Gene ID:
ENSAPLG00000003185
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003255
17290095 - 17318820
28726