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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17314168_17316908_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17314168 - 17316908
Intron Length:
2741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
AAACTCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTGTCTCAAACT
Flanking Amino Acid:
LQGMLEAGENGEKLDRLSNP
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
66.1
45
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
63.6
0.31
1.1
58.6
41.9
Minor 5ss
31.8
-2.1
3.1
36.6
41.8
Minor BPS
50
0.08
2
71.87
45.4

Associated Gene:

Gene:
PDLIM4
Ensembl Gene ID:
ENSAPLG00000003185
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003255
17290095 - 17318820
28726