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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17331428_17332706_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17331428 - 17332706
Intron Length:
1279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCCA
5'SS Class:
major
3'SS Sequence:
TCCTTGGCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
AATTCAGTAATC
Flanking Amino Acid:
GSFISGQLSDRFGRKSILFS
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
63.2
42.9
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
66
0.36
1
58.3
42
Minor 5ss
36.6
-1.5
3.3
48.7
47
Minor BPS
50.1
-0
2.2
67.3
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009155
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009530
17325760 - 17345599
19840