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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17335342_17336657_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17335342 - 17336657
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
AAACTTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTATTCTGAAAC
Flanking Amino Acid:
IPGLFCVPLWWIIPESPRWL
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70.5
0.46
1
63.3
41.8
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
64.1
0.42
1.5
73.51
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009155
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009530
17325760 - 17345599
19840