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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17338368_17339319_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17338368 - 17339319
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
GTTTCTGGAATA
Flanking Amino Acid:
ATITIMSLLLWFFTSVGYFG
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
84.9
0.79
0.8
84.1
30.8
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
50.5
0.01
2.1
68.66
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009155
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009530
17325760 - 17345599
19840