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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17347682_17356223_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17347682 - 17356223
Intron Length:
8542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTGTTGGAAGA
Flanking Amino Acid:
DVYRSTIVTEWNLVCDNDWK
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
42
-0.6
2.3
58.67
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009189
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009612
17347289 - 17372528
25240