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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17356328_17357600_F

Intron Information:

Intron Rank:
2
Intron Class:
major_hybrid
Intron Phase:
2
Intron Coordinates:
17356328 - 17357600
Intron Length:
1273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
AAATCCATGGAAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCCTTTAAAT
Flanking Amino Acid:
GSFISGQLSDKFGRKNVLFA
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
71.8
34.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
48.7
-0
1.2
47
39.5
Minor 5ss
39.5
-1.2
3.5
55
43.9
Minor BPS
77.7
0.95
1.3
90.96
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009189
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009612
17347289 - 17372528
25240