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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17359136_17360112_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17359136 - 17360112
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ACATTTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATGAACA
Flanking Amino Acid:
LPGLLCIPLWWVIPESPRWL
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79.5
0.66
0.9
72.9
36.7
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
60.7
0.33
1.7
74.44
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009189
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009612
17347289 - 17372528
25240