About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17364901_17365917_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17364901 - 17365917
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TCTGTCTGATCG
Flanking Amino Acid:
LTITIMSVILWMIISVGYFG
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
89.5
0.89
0.6
87.9
22.1
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
47.6
-0.3
1.9
55.23
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009189
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009612
17347289 - 17372528
25240