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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17366133_17367330_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17366133 - 17367330
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATGGAAC
5'SS Class:
major
3'SS Sequence:
ATTTTGATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTATAGAAGT
Flanking Amino Acid:
VLLFIQLVPSQFRAVSILLV
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
65.7
40.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.9
0.72
0.9
78.6
39.1
Minor 5ss
40
-1.1
3.1
50.2
40.1
Minor BPS
47
-0.1
2.1
74.85
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009189
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009612
17347289 - 17372528
25240