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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17367514_17368298_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17367514 - 17368298
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TGCATTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTTTCTTGCATT
Flanking Amino Acid:
SILSPYFVYLGAYDRFLPYI
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.7
34.9
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
64.4
0.33
1
58.2
43
Minor 5ss
39.7
-1.2
2.8
46.1
43.6
Minor BPS
61
0.43
1.9
84.4
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009189
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009612
17347289 - 17372528
25240